Genetic evidence of population subdivision among Masai giraffes separated by the Gregory Rift Valley in Tanzania

DOI: 10.1002/ece3.10160Read our scientific commentary

Research by

George G. Lohay, Derek Lee, Lan Wu‐Cavener, David Pearce, Xiaoyi Hou, Monica L. Bond, Douglas R. Cavener

Combines mitochondrial and nuclear variation to resolve east–west Masai giraffe subdivision and estimate contrasting inbreeding levels across Tanzanian populations.

Study summary

Giraffe mothers across a valley carry ancient genetic differences. Tanzania’s Gregory Rift escarpments separate the Serengeti and Tarangire ecosystems, placing steep cliffs between populations of Masai giraffes. Their DNA offered a way to investigate whether animals had crossed this landscape and reproduced, even long before anyone could observe their journeys.

George Lohay, Derek Lee and colleagues analysed whole genomes from 100 giraffes and a shorter mitochondrial sequence from 320 animals sampled across six protected areas. They compared DNA inherited from both parents with mitochondrial DNA inherited through mothers, then examined the terrain for possible routes between populations. Differences between those two genetic histories could reveal whether males and females had contributed differently to past connections.

The main eastern and western populations carried deeply separated maternal lineages, suggesting little female-mediated exchange over hundreds of thousands of years. Nuclear DNA suggested more recent male-mediated exchange, though its timing is uncertain. Lake Manyara giraffes complicated the division, combining western maternal ancestry with substantial eastern nuclear ancestry. The team proposed conserving eastern and western Masai giraffes as separate evolutionary units, not declaring new species. Their practical priority was maintaining connections among populations on each side of the escarpments, where fragmentation could further isolate already differentiated animals.

Summary by The Last Giraffe

Publication details

Study facts

Method
Population-genetic analysis of mitochondrial sequences and whole-genome variation, with landscape connectivity comparisons.
Location
Six protected areas in the Serengeti and Tarangire ecosystems, northern Tanzania.
Species
Masai giraffe, Giraffa camelopardalis tippelskirchi in the paper's nomenclature.
Sample
320 individuals for the fecal mitochondrial marker; 100 biopsy-sampled giraffes for whole mitochondrial/nuclear genomes. Cross-collection subject overlap is not specified in main Methods.
Period
Fecal collection: December 2019–March 2021; biopsy collection dates not separately specified in main Methods.

Full citation

George G. Lohay, Derek Lee, Lan Wu‐Cavener, David Pearce, Xiaoyi Hou, Monica L. Bond, Douglas R. Cavener (2023). Genetic evidence of population subdivision among Masai giraffes separated by the Gregory Rift Valley in Tanzania. Ecology and Evolution. https://doi.org/10.1002/ece3.10160

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