Giraffe genome sequence reveals clues to its unique morphology and physiology

DOI: 10.1038/ncomms11519

Research by

Morris Agaba, Edson Ishengoma, Webb Miller, Barbara C. McGrath, Chelsea N. Hudson, Oscar C. Bedoya Reina, Aakrosh Ratan, Rico Burhans, Rayan Chikhi, Paul Medvedev, Craig A. Praul, Lan Wu‐Cavener, Brendan Rich Wood, Heather Robertson, Linda M. Penfold, Douglas R. Cavener

Supplies giraffe and okapi draft genomes and a comparative screen identifying 70 genes with multiple sequence-based signals of adaptation.

Study summary

Giraffe gene changes protected mice from high blood pressure. A giraffe needs high pressure to send blood about two metres upwards from its heart to its brain. Earlier mouse experiments showed that deleting a gene called FGFRL1 disrupted both bone and heart development, suggesting a possible connection between the two systems. In 2016, researchers investigated whether changes in genes with such shared roles could help explain giraffes' height and circulation.

Morris Agaba and his team compared genetic sequences from two Masai giraffes and one okapi with those of cattle and other mammals. The okapi, the giraffe's closest living relative, has a much shorter neck, making it a useful comparison. The team searched for distinctive giraffe changes in genes, looking especially for changes predicted to affect how the proteins they encode work.

FGFRL1, which helps regulate growth signals, stood out: the giraffe version encoded seven distinctive changes in the protein. These made it a candidate for connecting skeletal and cardiovascular adaptations, although sequences alone could not establish their effects. Five years later, Liu and colleagues put seven giraffe-type changes into mice. Those mice resisted the rise in blood pressure induced by angiotensin II, a substance used to trigger hypertension; this did not establish the same protection in giraffes or people. The 2016 comparison had identified a gene through which giraffe evolution could link growth and circulation, and the later experiment demonstrated an effect on blood pressure in mice.

Summary by The Last Giraffe

Publication details

Study facts

Method
Genome sequencing and assembly, comparative coding-sequence analysis and targeted confirmation of selected substitutions.
Location
Giraffe samples from Kenya and Nashville Zoo; okapi from White Oak, United States.
Species
Masai giraffe (Giraffa camelopardalis tippelskirchi) and Okapia johnstoni; targeted comparisons with other giraffe subspecies.
Sample
Two female Masai giraffes and one fetal male okapi for genome sequencing; additional targeted giraffe sequence checks.
Period
Tissue collection calendar dates not specified in the accessed main Methods.

Full citation

Morris Agaba, Edson Ishengoma, Webb Miller, Barbara C. McGrath, Chelsea N. Hudson, Oscar C. Bedoya Reina, Aakrosh Ratan, Rico Burhans, Rayan Chikhi, Paul Medvedev, Craig A. Praul, Lan Wu‐Cavener, Brendan Rich Wood, Heather Robertson, Linda M. Penfold, Douglas R. Cavener (2016). Giraffe genome sequence reveals clues to its unique morphology and physiology. Nature Communications. https://doi.org/10.1038/ncomms11519

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